####################################### 
By using this module, you agree to comply with the Rosetta license available at 
/n/app/rosetta/3.13/LICENSE.md or
https://harvardmed.atlassian.net/wiki/spaces/O2/pages/1995112452/Rosetta+License 
The Rosetta license states that: 
- the software can only be used for non-profit academic research. 
- you are not allowed to redistribute the software. 
- you should share your Rosetta results with other non-profit academic
researchers. 
- you must cite/acknowledge Rosetta and the Developers in your publications. 
- if you modify the software, Rosetta may make similar modifications, and you
won't sue them. 
####################################### 
core.init: Checking for fconfig files in pwd and ./rosetta/flags 
core.init: Rosetta version: rosetta.source.release-280 r280 2021.16+release.8ee4f02 8ee4f02ac5768a8a339ffada74cb0ff5f778b3e6 https://www.rosettacommons.org 2021-04-20T20:57:38.289184
core.init: command: relax.default.linuxgccrelease -scorefile relax.sc @flags -suffix 6
basic.random.init_random_generator: 'RNG device' seed mode, using '/dev/urandom', seed=-3128267 seed_offset=0 real_seed=-3128267
basic.random.init_random_generator: RandomGenerator:init: Normal mode, seed=-3128267 RG_type=mt19937
core.init: Resolved executable path: /n/app/rosetta/3.13/source/build/src/release/linux/3.10/64/x86/gcc/4.8/default/relax.default.linuxgccrelease
core.init: Looking for database based on location of executable: /n/app/rosetta/3.13/database/
core.scoring.ScoreFunctionFactory: SCOREFUNCTION: ref2015
core.scoring.etable: Starting energy table calculation
core.scoring.etable: smooth_etable: changing atr/rep split to bottom of energy well
core.scoring.etable: smooth_etable: spline smoothing lj etables (maxdis = 6)
core.scoring.etable: smooth_etable: spline smoothing solvation etables (max_dis = 6)
core.scoring.etable: Finished calculating energy tables.
basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/HBPoly1D.csv
basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/HBFadeIntervals.csv
basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/HBEval.csv
basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/DonStrength.csv
basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/AccStrength.csv
core.chemical.GlobalResidueTypeSet: Finished initializing fa_standard residue type set.  Created 986 residue types
core.chemical.GlobalResidueTypeSet: Total time to initialize 1.24 seconds.
basic.io.database: Database file opened: scoring/score_functions/rama/fd/all.ramaProb
basic.io.database: Database file opened: scoring/score_functions/rama/fd/prepro.ramaProb
basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.all.txt
basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.gly.txt
basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.pro.txt
basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.valile.txt
basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA
basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA_n
core.scoring.P_AA: shapovalov_lib::shap_p_aa_pp_smooth_level of 1( aka low_smooth ) got activated.
basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/shapovalov/10deg/kappa131/a20.prop
protocols.relax.RelaxScriptManager: Reading relax scripts list from database.
protocols.relax.RelaxScriptManager: Looking for MonomerRelax2019.txt
protocols.relax.RelaxScriptManager: ================== Reading script file: /n/app/rosetta/3.13/database/sampling/relax_scripts/MonomerRelax2019.txt ==================
protocols.relax.RelaxScriptManager: repeat %%nrepeats%%
protocols.relax.RelaxScriptManager: coord_cst_weight 1.0
protocols.relax.RelaxScriptManager: scale:fa_rep 0.040
protocols.relax.RelaxScriptManager: repack
protocols.relax.RelaxScriptManager: scale:fa_rep 0.051
protocols.relax.RelaxScriptManager: min 0.01
protocols.relax.RelaxScriptManager: coord_cst_weight 0.5
protocols.relax.RelaxScriptManager: scale:fa_rep 0.265
protocols.relax.RelaxScriptManager: repack
protocols.relax.RelaxScriptManager: scale:fa_rep 0.280
protocols.relax.RelaxScriptManager: min 0.01
protocols.relax.RelaxScriptManager: coord_cst_weight 0.0
protocols.relax.RelaxScriptManager: scale:fa_rep 0.559
protocols.relax.RelaxScriptManager: repack
protocols.relax.RelaxScriptManager: scale:fa_rep 0.581
protocols.relax.RelaxScriptManager: min 0.01
protocols.relax.RelaxScriptManager: coord_cst_weight 0.0
protocols.relax.RelaxScriptManager: scale:fa_rep 1
protocols.relax.RelaxScriptManager: repack
protocols.relax.RelaxScriptManager: min 0.00001
protocols.relax.RelaxScriptManager: accept_to_best
protocols.relax.RelaxScriptManager: endrepeat
core.scoring.constraints.util: Constraint choice: thioether.cst
protocols.jd2.PDBJobInputter: Instantiate PDBJobInputter
protocols.jd2.PDBJobInputter: PDBJobInputter::fill_jobs
protocols.jd2.PDBJobInputter: pushed relax_ubrsp5-wbp2_OXT10_0001.pdb nstruct index 1
protocols.evaluation.ChiWellRmsdEvaluatorCreator: Evaluation Creator active ... 
protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job
protocols.jd2.PDBJobInputter: filling pose from PDB relax_ubrsp5-wbp2_OXT10_0001.pdb
core.import_pose.import_pose: File 'relax_ubrsp5-wbp2_OXT10_0001.pdb' automatically determined to be of type PDB
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 1 atoms at position 630 in file relax_ubrsp5-wbp2_OXT10_0001.pdb. Best match rsd_type:  GLY
core.conformation.Residue: [ WARNING ] Residue::inter_residue_connection_partner: Invalid residue connection, returning BOGUS ID: this_rsd= CYX 395 connid= 3 partner_seqpos= 0
core.conformation.Residue: [ WARNING ] missing an atom: 395  V1  that depends on a nonexistent polymer connection! 
core.conformation.Residue: [ WARNING ]  --> generating it using idealized coordinates.
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] can't find pose atom for file-residue 630 atom  OXT (trying to store temperature in PDBInfo)
core.scoring.constraints.ConstraintsIO: read constraints from thioether.cst
core.scoring.constraints.ConstraintsIO: Read in 6 constraints
basic.io.database: Database file opened: scoring/score_functions/elec_cp_reps.dat
core.scoring.elec.util: Read 40 countpair representative atoms
core.pack.dunbrack.RotamerLibrary: shapovalov_lib_fixes_enable option is true.
core.pack.dunbrack.RotamerLibrary: shapovalov_lib::shap_dun10_smooth_level of 1( aka lowest_smooth ) got activated.
core.pack.dunbrack.RotamerLibrary: Binary rotamer library selected: /n/app/rosetta/3.13/database/rotamer/shapovalov/StpDwn_0-0-0/Dunbrack10.lib.bin
core.pack.dunbrack.RotamerLibrary: Using Dunbrack library binary file '/n/app/rosetta/3.13/database/rotamer/shapovalov/StpDwn_0-0-0/Dunbrack10.lib.bin'.
core.pack.dunbrack.RotamerLibrary: Dunbrack 2010 library took 0.28 seconds to load from binary
protocols.relax.FastRelax: CMD: repeat  -1872.28  0  0  0.55
protocols.relax.FastRelax: CMD: coord_cst_weight  -1872.28  0  0  0.55
protocols.relax.FastRelax: CMD: scale:fa_rep  -2231.77  0  0  0.022
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 17167 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -2285.03  0  0  0.022
protocols.relax.FastRelax: CMD: scale:fa_rep  -2276.34  0  0  0.02805
protocols.relax.FastRelax: CMD: min  -2739.63  1.78721  1.78721  0.02805
protocols.relax.FastRelax: CMD: coord_cst_weight  -2739.63  1.78721  1.78721  0.02805
protocols.relax.FastRelax: CMD: scale:fa_rep  -1725.24  1.78721  1.78721  0.14575
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 15915 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -1772.1  1.78721  1.78721  0.14575
protocols.relax.FastRelax: CMD: scale:fa_rep  -1707.54  1.78721  1.78721  0.154
protocols.relax.FastRelax: CMD: min  -2294.67  1.27911  1.27911  0.154
protocols.relax.FastRelax: CMD: coord_cst_weight  -2294.67  1.27911  1.27911  0.154
protocols.relax.FastRelax: CMD: scale:fa_rep  -2003.97  1.27911  1.27911  0.30745
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 15064 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -2005.32  1.27911  1.27911  0.30745
protocols.relax.FastRelax: CMD: scale:fa_rep  -1982.69  1.27911  1.27911  0.31955
protocols.relax.FastRelax: CMD: min  -2075  1.36728  1.36728  0.31955
protocols.relax.FastRelax: CMD: coord_cst_weight  -2075  1.36728  1.36728  0.31955
protocols.relax.FastRelax: CMD: scale:fa_rep  -1833.72  1.36728  1.36728  0.55
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 14577 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -1833.33  1.36728  1.36728  0.55
protocols.relax.FastRelax: CMD: min  -1890.97  1.83691  1.83691  0.55
protocols.relax.FastRelax: MRP: 0  -1890.97  -1890.97  1.83691  1.83691  
protocols.relax.FastRelax: CMD: accept_to_best  -1890.97  1.83691  1.83691  0.55
protocols.relax.FastRelax: CMD: endrepeat  -1890.97  1.83691  1.83691  0.55
protocols.relax.FastRelax: CMD: coord_cst_weight  -1890.97  1.83691  1.83691  0.55
protocols.relax.FastRelax: CMD: scale:fa_rep  -2251.11  1.83691  1.83691  0.022
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 17118 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -2288.86  1.83691  1.83691  0.022
protocols.relax.FastRelax: CMD: scale:fa_rep  -2280.27  1.83691  1.83691  0.02805
protocols.relax.FastRelax: CMD: min  -2735.83  1.98086  1.98086  0.02805
protocols.relax.FastRelax: CMD: coord_cst_weight  -2735.83  1.98086  1.98086  0.02805
protocols.relax.FastRelax: CMD: scale:fa_rep  -1729.92  1.98086  1.98086  0.14575
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 15765 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -1776.02  1.98086  1.98086  0.14575
protocols.relax.FastRelax: CMD: scale:fa_rep  -1712.09  1.98086  1.98086  0.154
protocols.relax.FastRelax: CMD: min  -2294.29  1.70584  1.70584  0.154
protocols.relax.FastRelax: CMD: coord_cst_weight  -2294.29  1.70584  1.70584  0.154
protocols.relax.FastRelax: CMD: scale:fa_rep  -2006.17  1.70584  1.70584  0.30745
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 14991 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -2007.46  1.70584  1.70584  0.30745
protocols.relax.FastRelax: CMD: scale:fa_rep  -1984.89  1.70584  1.70584  0.31955
protocols.relax.FastRelax: CMD: min  -2076.87  1.86383  1.86383  0.31955
protocols.relax.FastRelax: CMD: coord_cst_weight  -2076.87  1.86383  1.86383  0.31955
protocols.relax.FastRelax: CMD: scale:fa_rep  -1837.87  1.86383  1.86383  0.55
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 14575 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -1837.45  1.86383  1.86383  0.55
protocols.relax.FastRelax: CMD: min  -1891.96  2.25477  2.25477  0.55
protocols.relax.FastRelax: MRP: 1  -1891.96  -1891.96  2.25477  2.25477  
protocols.relax.FastRelax: CMD: accept_to_best  -1891.96  2.25477  2.25477  0.55
protocols.relax.FastRelax: CMD: endrepeat  -1891.96  2.25477  2.25477  0.55
protocols.relax.FastRelax: CMD: coord_cst_weight  -1891.96  2.25477  2.25477  0.55
protocols.relax.FastRelax: CMD: scale:fa_rep  -2250.59  2.25477  2.25477  0.022
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 17234 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -2287.18  2.25477  2.25477  0.022
protocols.relax.FastRelax: CMD: scale:fa_rep  -2278.2  2.25477  2.25477  0.02805
protocols.relax.FastRelax: CMD: min  -2735.61  2.92167  2.92167  0.02805
protocols.relax.FastRelax: CMD: coord_cst_weight  -2735.61  2.92167  2.92167  0.02805
protocols.relax.FastRelax: CMD: scale:fa_rep  -1739.34  2.92167  2.92167  0.14575
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 15743 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -1781.8  2.92167  2.92167  0.14575
protocols.relax.FastRelax: CMD: scale:fa_rep  -1718.69  2.92167  2.92167  0.154
protocols.relax.FastRelax: CMD: min  -2290.44  2.48513  2.48513  0.154
protocols.relax.FastRelax: CMD: coord_cst_weight  -2290.44  2.48513  2.48513  0.154
protocols.relax.FastRelax: CMD: scale:fa_rep  -2002.36  2.48513  2.48513  0.30745
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 14965 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -2000.87  2.48513  2.48513  0.30745
protocols.relax.FastRelax: CMD: scale:fa_rep  -1978.47  2.48513  2.48513  0.31955
protocols.relax.FastRelax: CMD: min  -2073.18  2.38567  2.38567  0.31955
protocols.relax.FastRelax: CMD: coord_cst_weight  -2073.18  2.38567  2.38567  0.31955
protocols.relax.FastRelax: CMD: scale:fa_rep  -1833.04  2.38567  2.38567  0.55
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 14666 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -1833.23  2.38567  2.38567  0.55
protocols.relax.FastRelax: CMD: min  -1887.94  2.30031  2.30031  0.55
protocols.relax.FastRelax: MRP: 2  -1887.94  -1891.96  2.25477  2.25477  
protocols.relax.FastRelax: CMD: accept_to_best  -1887.94  2.30031  2.30031  0.55
protocols.relax.FastRelax: CMD: endrepeat  -1887.94  2.30031  2.30031  0.55
protocols.relax.FastRelax: CMD: coord_cst_weight  -1887.94  2.30031  2.30031  0.55
protocols.relax.FastRelax: CMD: scale:fa_rep  -2250.31  2.30031  2.30031  0.022
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 17436 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -2291.25  2.30031  2.30031  0.022
protocols.relax.FastRelax: CMD: scale:fa_rep  -2281.15  2.30031  2.30031  0.02805
protocols.relax.FastRelax: CMD: min  -2744.39  4.82548  4.82548  0.02805
protocols.relax.FastRelax: CMD: coord_cst_weight  -2744.39  4.82548  4.82548  0.02805
protocols.relax.FastRelax: CMD: scale:fa_rep  -1727.38  4.82548  4.82548  0.14575
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 15751 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -1776.66  4.82548  4.82548  0.14575
protocols.relax.FastRelax: CMD: scale:fa_rep  -1712.69  4.82548  4.82548  0.154
protocols.relax.FastRelax: CMD: min  -2292.94  4.19493  4.19493  0.154
protocols.relax.FastRelax: CMD: coord_cst_weight  -2292.94  4.19493  4.19493  0.154
protocols.relax.FastRelax: CMD: scale:fa_rep  -2001.27  4.19493  4.19493  0.30745
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 14992 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -2003.31  4.19493  4.19493  0.30745
protocols.relax.FastRelax: CMD: scale:fa_rep  -1980.52  4.19493  4.19493  0.31955
protocols.relax.FastRelax: CMD: min  -2076.03  3.78431  3.78431  0.31955
protocols.relax.FastRelax: CMD: coord_cst_weight  -2076.03  3.78431  3.78431  0.31955
protocols.relax.FastRelax: CMD: scale:fa_rep  -1832.97  3.78431  3.78431  0.55
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 14566 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -1833.36  3.78431  3.78431  0.55
protocols.relax.FastRelax: CMD: min  -1889.53  3.55284  3.55284  0.55
protocols.relax.FastRelax: MRP: 3  -1889.53  -1891.96  2.25477  2.25477  
protocols.relax.FastRelax: CMD: accept_to_best  -1889.53  3.55284  3.55284  0.55
protocols.relax.FastRelax: CMD: endrepeat  -1889.53  3.55284  3.55284  0.55
protocols.relax.FastRelax: CMD: coord_cst_weight  -1889.53  3.55284  3.55284  0.55
protocols.relax.FastRelax: CMD: scale:fa_rep  -2255.06  3.55284  3.55284  0.022
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 17379 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -2284.84  3.55284  3.55284  0.022
protocols.relax.FastRelax: CMD: scale:fa_rep  -2275.44  3.55284  3.55284  0.02805
protocols.relax.FastRelax: CMD: min  -2741.92  4.98635  4.98635  0.02805
protocols.relax.FastRelax: CMD: coord_cst_weight  -2741.92  4.98635  4.98635  0.02805
protocols.relax.FastRelax: CMD: scale:fa_rep  -1707.45  4.98635  4.98635  0.14575
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 15595 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -1757.71  4.98635  4.98635  0.14575
protocols.relax.FastRelax: CMD: scale:fa_rep  -1691.65  4.98635  4.98635  0.154
protocols.relax.FastRelax: CMD: min  -2297.08  4.67361  4.67361  0.154
protocols.relax.FastRelax: CMD: coord_cst_weight  -2297.08  4.67361  4.67361  0.154
protocols.relax.FastRelax: CMD: scale:fa_rep  -2002.31  4.67361  4.67361  0.30745
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 15052 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -2000.49  4.67361  4.67361  0.30745
protocols.relax.FastRelax: CMD: scale:fa_rep  -1977.52  4.67361  4.67361  0.31955
protocols.relax.FastRelax: CMD: min  -2070.67  4.50032  4.50032  0.31955
protocols.relax.FastRelax: CMD: coord_cst_weight  -2070.67  4.50032  4.50032  0.31955
protocols.relax.FastRelax: CMD: scale:fa_rep  -1824.27  4.50032  4.50032  0.55
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_rotamers: built 14531 rotamers at 630 positions.
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
protocols.relax.FastRelax: CMD: repack  -1824.21  4.50032  4.50032  0.55
protocols.relax.FastRelax: CMD: min  -1883.58  4.27769  4.27769  0.55
protocols.relax.FastRelax: MRP: 4  -1883.58  -1891.96  2.25477  2.25477  
protocols.relax.FastRelax: CMD: accept_to_best  -1883.58  4.27769  4.27769  0.55
protocols.relax.FastRelax: CMD: endrepeat  -1883.58  4.27769  4.27769  0.55
protocols::checkpoint: Deleting checkpoints of FastRelax
protocols.jd2.JobDistributor: relax_relax_ubrsp5-wbp2_OXT10_00016_0001 reported success in 2751 seconds
protocols.jd2.JobDistributor: no more batches to process... 
protocols.jd2.JobDistributor: 1 jobs considered, 1 jobs attempted in 2751 seconds
basic.citation_manager.CitationManager: 
The following Rosetta modules were used during this run of Rosetta, and should be cited:

FastRelax Mover's citation(s):
Khatib F, Cooper S, Tyka MD, Xu K, Makedon I, Popovic Z, Baker D, and Players F.  (2011).  Algorithm discovery by protein folding game players.  Proc Natl Acad Sci USA 108(47):18949-53.  doi: 10.1073/pnas.1115898108.

Maguire JB, Haddox HK, Strickland D, Halabiya SF, Coventry B, Griffin JR, Pulavarti SVSRK, Cummins M, Thieker DF, Klavins E, Szyperski T, DiMaio F, Baker D, and Kuhlman B.  (2020).  Perturbing the energy landscape for improved packing during computational protein design..  Proteins "in press".  doi: 10.1002/prot.26030.


